Publications

Publications
2017
Ebai T, de Oliveira FMS, Löf L, Wik L, Schweiger C, Larsson A, Keilholtz U, Haybaeck J, Landegren U, Kamali-Moghaddam M.
Analytically Sensitive Protein Detection in Microtiter Plates by Proximity Ligation with Rolling Circle Amplification.
Clin Chem. 2017
DOI link

Persson N, Stuhr-Hansen N, Risinger C, Mereiter S, Polónia A, Polom K, Kovács A, Roviello F, Reis CA, Welinder C, Danielsson L, Jansson B, Blixt O.
Epitope mapping of a new anti-Tn antibody detecting gastric cancer cells.
Glycobiology. 2017
DOI link

Albrecht S, Mittermayr S, Smith J, Martín SM, Doherty M, Bones J.
Twoplex 12/13 C6 aniline stable isotope and linkage-specific sialic acid labeling 2D-LC-MS workflow for quantitative N-glycomics.
Proteomics. 2017
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Smith J, Mittermayr S, Váradi C, Bones J.
Quantitative glycomics using liquid phase separations coupled to mass spectrometry.
Analyst. 2017
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Björkesten J, Enroth S, Shen Q, Wik L, Hougaard D, Cohen A, Sörensen L, Giedraitis V, Ingelsson M, Larsson A, Kamali-Moghaddam M, Landegren U.
Stability of Proteins in Dried Blood Spot Biobanks.
Mol Cell Proteomics. 2017
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Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG.
Databases and Associated Tools for Glycomics and Glycoproteomics.
Methods Mol Biol. 2017
DOI link

Adamczyk B, Stöckmann H, O'Flaherty R, Karlsson NG, Rudd PM.
High-Throughput Analysis of the Plasma N-Glycome by UHPLC.
Methods Mol Biol. 2017
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Larssen P, Wik L, Czarnewski P, Eldh M, Löf L, Ronquist KG, Dubois L, Freyhult E, Gallant CJ, Oelrich J, Larsson A, Ronquist G, Villablanca EJ, Landegren U, Gabrielsson S, Kamali-Moghaddam M.
Tracing Cellular Origin of Human Exosomes Using Multiplex Proximity Extension Assays.
Mol Cell Proteomics. 2017
DOI link

Polom K, Marrelli D, Roviello G, Voglino C, Vindigni C, Generali D, Roviello F.
Single Center Experience on Anatomy-and Histopathology-Based Gastric Cancer Molecular Classification.
Cancer Invest. 2017
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Jin C, Kenny DT, Skoog EC, Padra M, Adamczyk B, Vitizeva V, Thorell A, Venkatakrishnan V, Lindén SK, Karlsson NG.
Structural diversity of human gastric mucin glycans.
Mol Cell Proteomics. 2017
DOI link

Löf L, Arngården L, Olsson-Strömberg U, Siart B, Jansson M, Dahlin JS, Thörn I, Christiansson L, Hermansson M, Larsson A, Ahlstrand E, Wålinder G, Söderberg O, Rosenquist R, Landegren U, Kamali-Moghaddam M.
Flow Cytometric Measurement of Blood Cells with BCR-ABL1 Fusion Protein in Chronic Myeloid Leukemia.
Sci Rep. 2017
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Bugaytsova JA, Björnham O, Chernov YA, Gideonsson P, Henriksson S, Mendez M, Sjöström R, Mahdavi J, Shevtsova A, Ilver D, Moonens K, Quintana-Hayashi MP, Moskalenko R, Aisenbrey C, Bylund G, Schmidt A, Åberg A, Brännström K, Königer V, Vikström S, Rakhimova L, Hofer A, Ögren J, Liu H, Goldman MD, Whitmire JM, Ådén J, Younson J, Kelly CG, Gilman RH, Chowdhury A, Mukhopadhyay AK, Nair GB, Papadakos KS, Martinez-Gonzalez B, Sgouras DN, Engstrand L, Unemo M, Danielsson D, Suerbaum S, Oscarson S, Morozova-Roche LA, Olofsson A, Gröbner G, Holgersson J, Esberg A, Strömberg N, Landström M, Eldridge AM, Chromy BA, Hansen LM, Solnick JV, Lindén SK, Haas R, Dubois A, Merrell DS, Schedin S, Remaut H, Arnqvist A, Berg DE, Borén T.
Helicobacter pylori Adapts to Chronic Infection and Gastric Disease via pH-Responsive BabA-Mediated Adherence.
Cell Host Microbe. 2017
DOI link

2016
Nina Persson,Bo Jansson,Nicolai Stuhr-Hansen,András Kovács,Charlotte Welinder,Lena Danielsson,Ola Blixt.
A Combinatory Antibody–Antigen Microarray Assay for High-Content Screening of Single-Chain Fragment Variable Clones from Recombinant Libraries.
PLoS One. 2016
DOI link

Karol Polom, Daniele Marrelli, Giandomenico Roviello, Valeria Pascale, Costantino Voglino, Henry Rho, Mario Marini, Raffaele Macchiarelli and Franco Roviello.
Molecular key to understand the gastric cancer biology in elderly patients—The role of microsatellite instability.
J Surg Oncol. 2016
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Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG.
Databases and Associated Tools for Glycomics and Glycoproteomics.
Methods Mol Biol.
DOI link

Adamczyk B, Stöckmann H, O'Flaherty R, Karlsson NG, Rudd PM.
High-Throughput Analysis of the Plasma N-Glycome by UHPLC.
Methods Mol Biol.
DOI link

Löf L, Ebai T, Dubois L, Wik L, Ronquist KG, Nolander O, Lundin E, Söderberg O, Landegren U, Kamali-Moghaddam M.
Detecting individual extracellular vesicles using a multicolor in situ proximity ligation assay with flow cytometric readout.
Sci Rep. 2016
DOI link

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C.
The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.
Glycobiology. 2016
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Gastaldello A, Alocci D, Baeriswyl JL, Mariethoz J, Lisacek F.
GlycoSiteAlign: Glycosite Alignment Based on Glycan Structure.
J Proteome Res. 2016
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Almeida A, Kolarich D.
The promise of protein glycosylation for personalised medicine.
Biochim Biophys Acta. 2016
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Adamczyk B, Albrecht S, Stöckmann H, Ghoneim IM, Al-Eknah M, Al-Busadah KA, Karlsson NG, Carrington SD, Rudd PM.
Pregnancy-Associated Changes of IgG and Serum N-Glycosylation in Camel (Camelus dromedarius).
J Proteome Res. 2016
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Magalhães A, Rossez Y, Robbe-Masselot C, Maes E, Gomes J, Shevtsova A, Bugaytsova J, Borén T, Reis CA.
Muc5ac gastric mucin glycosylation is shaped by FUT2 activity and functionally impacts Helicobacter pylori binding.
Science Reports. 2016
DOI link

Magalhães A, Mereiter S, Reis C.
Reciprocal Modulation of Terminal Sialylation and Bisecting N-Glycans: A New Axis of Cancer-Cell Glycome Regulation?
Journal of Biological Chemistry. 2016
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Mereiter S, Magalhães A, Adamczyk B, Jin C, Almeida A, Drici L, Ibáñez-Vea M, Larsen MR, Kolarich D, Karlsson NG, Reis CA.
Glycomic and sialoproteomic data of gastric carcinoma cells overexpressing ST3GAL4.
Data Brief. 2016
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Mereiter S, Balmaña M, Gomes J, Magalhães A, Reis CA.
Glycomic Approaches for the Discovery of Targets in Gastrointestinal Cancer.
Frontiers in Oncology. 2016
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Blokzijl A, Chen LE, Gustafsdottir SM, Vuu J, Ullenhag G, Kämpe O, Landegren U, Kamali-Moghaddam M, Hedstrand H.
Elevated Levels of SOX10 in Serum from Vitiligo and Melanoma Patients, Analyzed by Proximity Ligation Assay.
PLoS One. 2016
DOI link

Mereiter S, Magalhães A, Adamczyk B, Jin C, Almeida A, Drici L, Ibáñez-Vea M, Gomes C, Ferreira JA, Afonso LP, Santos LL, Larsen MR, Kolarich D, Karlsson NG, Reis CA.
Glycomic analysis of gastric carcinoma cells discloses glycans as modulators of RON receptor tyrosine kinase activation in cancer.
Biochim Biophys Acta. 2016
DOI link

Lind AL, Wu D, Freyhult E, Bodolea C, Ekegren T, Larsson A, Gustafsson MG, Katila L, Bergquist J, Gordh T, Landegren U, Kamali-Moghaddam M.
A Multiplex Protein Panel Applied to Cerebrospinal Fluid Reveals Three New Biomarker Candidates in ALS but None in Neuropathic Pain Patients.
PLoS One. 2016
DOI link

Mariethoz J, Khatib K, Alocci D, Campbell MP, Karlsson NG, Packer NH, Mullen EH, Lisacek F.
SugarBindDB, a resource of glycan-mediated host-pathogen interactions.
Nucleic Acids Res. 2016
DOI link


Publications
2015
Alocci D, Mariethoz J, Horlacher O, Campbell MP, Lisacek F.
Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search.
PLOS One 2015 Dec
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Horlacher O, Nikitin F, Alocci D, Mariethoz J, Muller M, Lisacek F.
MzJava: An open source library for mass spectrometry data processing.
J Proteomics. 2015 Nov
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Farrell A, Mittermayr S, Morrissey B, Mc Loughlin N, Navas Iglesias N, Marison IW, Bones J
Quantitative host cell protein analysis using two dimensional data independent LC-MS(E).
Anal Chem. 2015 Sep
DOI link

Pinho SS, Reis CA.
Glycosylation in cancer: mechanisms and clinical implications.
Nat Rev Cancer. 2015 Sep
Article

Stöckmann H, O'Flaherty R, Adamczyk B, Saldova R, Rudd PM.
Automated, high-throughput serum glycoprofiling platform.
Integr Biol (Camb). 2015 Sep
Article

Carvalho S, Catarino TA, Dias AM, Kato M, Almeida A, Hessling B, Figueiredo J, Gärtner F, Sanches JM, Ruppert T, Miyoshi E, Pierce M, Carneiro F, Kolarich D, Seruca R, Yamaguchi Y, Taniguchi N, Reis CA, Pinho SS.
Preventing E-cadherin aberrant N-glycosylation at Asn-554 improves its critical function in gastric cancer.
Oncogene. 2015 Jul.
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Magalhaes A, Marcos-Pinto R, Nairn AV, Dela Rosa M, Ferreira RM, Junqueira-Neto S, Freitas D, Gomes J, Oliveira P, Santos MR, Marcos NT, Xiaogang W, Figueiredo C, Oliveira C, Dinis-Ribeiro M, Carneiro F, Moremen KW, David L, Reis CA.
Helicobacter pylori chronic infection and mucosal inflammation switches the human gastric glycosylation pathways.
Biochim Biophys Acta. 2015 Jul
DOI link

Awad W, Adamczyk B, Örnros J, Karlsson NG, Mani K, Logan DT.
Structural aspects of N-glycosylations and the C-terminal region in human glypican-1.
J Biol Chem. 2015 Jul 22
Article

Koos B, Kamali-Moghaddam M, David L, Sobrinho-Simões M, Dimberg A., Nilsson M, Wählby C and Söderberg O.
Next generation Pathology – surveillance of tumor microecology
J. Mol. Biol. 2015 Jun
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Koos B, Kamali-Moghaddam M, David L, Sobrinho-Simões M, Dimberg A, Nilsson M, Wählby C, Söderberg O.
Next generation Pathology - surveillance of tumor microecology.
J Mol Biol. 2015 Feb 25.
Article

2014
Corso G, Garosi L, Marelli D, Roviello F.
Assessment of a tumor bank:a thirty years experience of the University of Siena (Italy).
Cell Tissue Bank 2014 (Jul 2)
DOI link

Adamczyk B, Tharmalingam-Jaikaran T, Schomberg M, Szekre'nyes A', Kelly M. R, Karlsson G. N, Guttman A, Rudd P.
Comparison of separation techniques for the elucidation of IgG N-glycans pooled from healthy mammalian species.
Carbohydrate Research 2014 (389) 174-185
DOI link
This work was selected as a key scientific article contributing to excellence in biomedical research by the editor of Global Medical Discovery
On the cover of Global Medical Discovery

Elfineh L, Classon C, Asplund A, Pettersson U, Kamali-Moghaddam M. and Bergström Lind S.
Tyrosine Phosphorylation Profiling via in Situ Proximity Ligation Assay.
BMC Cancer 2014, 14:435
Article